SPARTAN 5.1 User's Guide: Table of Contents

Spartan 5.1 User's Guide

Table of Contents

Jump to Chapter: 1 2 3 4 5 6 7.1 7.2 8.1 8.2 9 10 11

What's Different About Spartan 5.1?

Chapter 1	Introduction SPARTAN SPARTAN's Architecture SPARTAN's Present Capabilities and Limitations *SPARTAN's Ab Initio* Module SPARTAN's Density Functional Module SPARTAN's Semi-Empirical Module SPARTAN's Mechanics Module SPARTAN's Properties Module SPARTAN's Graphics Module Hardware Platforms**	1.0 1.1 1.2 1.3 1.3.1 1.3.2 1.3.3 1.3.4 1.3.5 1.3.6 1.4
Chapter 2	General Operating Features Starting Spartan Pull-Down Menus Keystroke Equivalents Use of the Mouse Keyboard Functions Molecule Selection Lists of Molecules and Spreadsheets 3-Dimensional Displays Iconifying Spartan	2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9
Chapter 3	The Logo Menu About Spartan Color Preferences Print Setup Monitor Menus in the Monitor Dialog Logo File View Actions Help Periodic Table Calculator	3.0 3.1 3.2 3.3 3.4 3.5 3.5.1 3.5.1.1 3.5.1.2 3.5.1.3 3.5.1.4 3.5.1.5 3.6 3.7
Chapter 4	The File Menu New Open Close Save Save As Merge As Group As Delete Import Export Print Quit	4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 4.10 4.11 4.12
Chapter 5	The Model Menu Wire Ball and Wire Tube Ball and Spoke Space Filling Polyhedra Hide Hydrogens Labels Edit Labels Annotate Box	5.0 5.1 5.2 5.3 5.4 5.5 5.5.5 5.6 5.7 5.8 5.9 5.9.5 5.10
Chapter 6	The Geometry Menu Distance Angle Dihedral Freeze Center Constrain Distance Contrain Angle Constrain Dihedral Define Point Define Plane Surface Area Volume Report Symmetry Report Chirality	6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 6.10 6.11 6.12 6.12
Chapter 7	The Build Menu Edit Structure Entry Builder Expert Builder Peptide Builder Nucleotide Builder Library Molecule Building Functionality Menus in the Builders Logo File Edit Model Geometry Help Conformer Search Conformer Search Functionality Menus in the Conformer Search Dialog Logo File Edit Geometry Help Transition Search Transition Search Functionality Menus in the Transition Search Dialog Logo File Edit Geometry Help Treatment of Intermolecular Reactions Vibration Sequence Vibration Sequence Functionality Menus in the Vibration Sequence Dialog Logo File Edit Geometry Help Coordinate Driving Coordinate Driving Functionality Menus in the Coordinate Driving Dialog Logo File Edit Geometry Help Combinatorial Study Combinatorial Study Functionality Menus in the Combinatorial Study Dialog Logo File Edit Geometry Help Isotopes	7.0 7.1 7.1.1 7.1.2 7.1.3 7.1.4 7.1.5 7.1.6 7.1.7 7.1.7.1 7.1.7.2 7.1.7.3 7.1.7.4 7.1.7.5 7.1.7.6 7.2 7.2.1 7.2.2 7.2.2.1 7.2.2.2 7.2.2.3 7.2.2.4 7.2.2.5 7.3 7.3.1 7.3.2 7.3.2.1 7.3.2.2 7.3.2.3 7.3.2.4 7.3.2.5 7.3.3 7.4 7.4.1 7.4.2 7.4.2.1 7.4.2.2 7.4.2.3 7.4.2.4 7.4.2.5 7.5 7.5.1 7.5.2 7.5.2.1 7.5.2.2 7.5.2.3 7.5.2.4 7.5.2.5 7.6 7.6.1 7.6.2 7.6.2.1 7.6.2.2 7.6.2.3 7.6.2.4 7.6.2.5 7.7
Chapter 8	The Setup Menu Lists Ab Initio Density Functional Semi-Empirical Semi-Empirical Parameters Mechanics Molecular Mechanics Parameters External Gaussian 94 Properties Surfaces and Volumes Surfaces Volumes Standard Create Apply Submit	8.0 8.1 8.2 8.3 8.4 8.4.1 8.5 8.5.1 8.6 8.6.1 8.7 8.8 8.8.1 8.8.2 8.9 8.9.1 8.9.2 8.10
Chapter 9	The Display Menu Output Properties Energy in hartrees Energy in kcal/mol Energy in kJ/mol Dipole E(HOMO/LUMO) Mol Wt Charges Surfaces Surfaces Slices Create Edit Delete Color Schemes for Display of Slices Isosurfaces Create Edit Delete Vibration	9.0 9.1 9.2 9.2.1 9.2.2 9.2.3 9.2.4 9.2.5 9.2.6 9.2.7 9.2.8 9.3 9.4 9.4.1 9.4.2 9.4.3 9.4.4 9.5 9.5.1 9.5.2 9.5.3 9.6
Chapter 10	The Help Menu Use of the Mouse Keystroke Equivalents Ab Initio Options Density Functional Options Semi-Empirical Options Mechanics Options Properties Options Graphics Options Conformer Options Available Elements	10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 10.10
Chapter 11	Spartan's Spreadsheet Spreadsheet Operations Menus in the Spreadsheet Sheet Molecule Column Plot Help	11.0 11.1 11.2 11.2.1 11.2.2 11.2.3 11.2.4 11.2.5
Appendix A:	Files Associated with SPARTAN
Appendix B:	Units Used in SPARTAN
Index:	Index
Index:	SPARTAN Keywords

Citations:	SPARTAN Citation (Previously "Appendix A")
Glossary:	Glossary.

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